[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 115 items for (author: gardner & s)

EMDB-18742:
Structure of interleukin 6.
Method: single particle / : Gardner S, Bubeck D, Jin Y

PDB-8qy5:
Structure of interleukin 6.
Method: single particle / : Gardner S, Bubeck D, Jin Y

EMDB-18743:
Structure of interleukin 6 (gp130 P496L mutant).
Method: single particle / : Gardner S, Bubeck D, Jin Y

PDB-8qy6:
Structure of interleukin 6 (gp130 P496L mutant).
Method: single particle / : Gardner S, Bubeck D, Jin Y

EMDB-18741:
Structure of interleukin 11 (gp130 P496L mutant).
Method: single particle / : Gardner S, Bubeck D, Jin Y

PDB-8qy4:
Structure of interleukin 11 (gp130 P496L mutant).
Method: single particle / : Gardner S, Bubeck D, Jin Y

EMDB-41374:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41382:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41399:
Antibody N3-1 bound to SARS-CoV-2 spike
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tm1:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tma:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-15940:
CryoEM structure of GroEL-ADP.BeF3-Rubisco.
Method: single particle / : Gardner S, Saibil HR

EMDB-15942:
CryoEM structure of GroEL-GroES-ADP.AlF3-Rubisco.
Method: single particle / : Gardner S, Saibil HR

PDB-8ba8:
CryoEM structure of GroEL-ADP.BeF3-Rubisco.
Method: single particle / : Gardner S, Saibil HR

PDB-8ba9:
CryoEM structure of GroEL-GroES-ADP.AlF3-Rubisco.
Method: single particle / : Gardner S, Saibil HR

EMDB-17815:
Pyrococcus abyssi DNA polymerase D (PolD) in its editing mode bound to a primer/template substrate containing a mismatch
Method: single particle / : Betancurt-Anzola L, Martinez-Carranza M, Zatopek KM, Gardner AF, Sauguet L

EMDB-17816:
Pyrococcus abyssi DNA polymerase D (PolD) in its editing mode bound to a primer/template substrate containing three consecutive mismatches
Method: single particle / : Betancurt-Anzola L, Martinez-Carranza M, Zatopek KM, Gardner AF, Sauguet L

EMDB-17817:
Intermediate conformer of Pyrococcus abyssi DNA polymerase D (PolD) bound to a primer/template substrate containing three consecutive mismatches
Method: single particle / : Betancurt-Anzola L, Martinez-Carranza M, Zatopek KM, Gardner AF, Sauguet L

PDB-8ppt:
Pyrococcus abyssi DNA polymerase D (PolD) in its editing mode bound to a primer/template substrate containing a mismatch
Method: single particle / : Betancurt-Anzola L, Martinez-Carranza M, Zatopek KM, Gardner AF, Sauguet L

PDB-8ppu:
Pyrococcus abyssi DNA polymerase D (PolD) in its editing mode bound to a primer/template substrate containing three consecutive mismatches
Method: single particle / : Betancurt-Anzola L, Martinez-Carranza M, Zatopek KM, Gardner AF, Sauguet L

PDB-8ppv:
Intermediate conformer of Pyrococcus abyssi DNA polymerase D (PolD) bound to a primer/template substrate containing three consecutive mismatches
Method: single particle / : Betancurt-Anzola L, Martinez-Carranza M, Zatopek KM, Gardner AF, Sauguet L

EMDB-41788:
S. cerevisiae Pex1/Pex6 with 1 mM ATP
Method: single particle / : Gardner BM, Richardson CD, Martin A, Lander GC, Chowdhury S

PDB-8u0v:
S. cerevisiae Pex1/Pex6 with 1 mM ATP
Method: single particle / : Gardner BM

EMDB-15939:
CryoEM structure of nucleotide-free GroEL-Rubisco.
Method: single particle / : Gardner S, Saibil HR

EMDB-15941:
CryoEM reconstruction of GroEL-ATP-Rubisco.
Method: single particle / : Gardner S, Saibil HR

EMDB-15943:
CryoEM reconstruction of GroEL-GroES-ADP.AlF3-Rubisco, class I.
Method: single particle / : Gardner S, Saibil HR

EMDB-15945:
CryoEM reconstruction of GroEL-GroES-ADP.AlF3-Rubisco, class III.
Method: single particle / : Gardner S, Saibil HR

EMDB-15946:
CryoEM reconstruction of GroEL-GroES-ADP.AlF3-Rubisco, class IV.
Method: single particle / : Gardner S, Saibil HR

PDB-8ba7:
CryoEM structure of nucleotide-free GroEL-Rubisco.
Method: single particle / : Gardner S, Saibil HR

EMDB-28115:
Western Equine Encephalitis Virus-Like Particle in Complex with SKW19 Fab
Method: single particle / : Pletnev S, Tsybovsky Y, Verardi R, Roedeger M, Kwong P

EMDB-28116:
Western Equine Encephalitis Virus-Like Particle in Complex with SKW24 Fab
Method: single particle / : Pletnev S, Tsybovsky Y, Verardi R, Roedeger M, Kwong PD

EMDB-28117:
Eastern Equine Encephalitis Virus-Like Particle in Complex with SKE26 Fab
Method: single particle / : Pletnev S, Verardi R, Roedeger M, Kwong P

EMDB-28118:
Cryo-EM structure of Antibody SKW11 in complex with Western Equine Encephalitis Virus-Like Particle
Method: single particle / : Cerutti G, Verardi R, Roederer M, Shapiro L

EMDB-28119:
Cryo-EM structure of Antibody SKT05 in complex with Western Equine Encephalitis Virus-like Particle
Method: single particle / : Cerutti G, Verardi R, Roederer M, Shapiro L

EMDB-28187:
Cryo-EM I1 reconstruction of antibody SKV09 in complex with VEEV alphavirus VLP
Method: single particle / : Casner RG, Verardi R, Roederer M, Shapiro L

EMDB-28188:
Cryo-EM I1 reconstruction of antibody SKV16 in complex with VEEV alphavirus VLP
Method: single particle / : Casner RG, Verardi R, Roederer M, Shapiro L

EMDB-27757:
Cryo-EM Structure of Eastern Equine Encephalitis Virus in complex with SKE26 Fab
Method: single particle / : Pletnev S, Verardi R, Roedeger M, Kwong P

EMDB-28056:
Venezuelan equine encephalitis virus-like particle in complex with Fab SKT05
Method: single particle / : Tsybovsky Y, Pletnev S, Verardi R, Roederer M, Kwong PD

EMDB-28058:
Venezuelan equine encephalitis virus-like particle in complex with Fab SKT05, local refinement
Method: single particle / : Tsybovsky Y, Pletnev S, Verardi R, Roederer M, Kwong PD

EMDB-28059:
Venezuelan equine encephalitis virus-like particle in complex with Fab SKT20
Method: single particle / : Tsybovsky Y, Pletnev S, Verardi R, Roederer M, Kwong PD

EMDB-28060:
Venezuelan equine encephalitis virus-like particle in complex with Fab SKT-20, local refinement
Method: single particle / : Tsybovsky Y, Pletnev S, Verardi R, Roederer M, Kwong PD

PDB-8dwo:
Cryo-EM Structure of Eastern Equine Encephalitis Virus in complex with SKE26 Fab
Method: single particle / : Pletnev S, Verardi R, Roedeger M, Kwong P

PDB-8eeu:
Venezuelan equine encephalitis virus-like particle in complex with Fab SKT05
Method: single particle / : Tsybovsky Y, Pletnev S, Verardi R, Roederer M, Kwong PD

PDB-8eev:
Venezuelan equine encephalitis virus-like particle in complex with Fab SKT-20
Method: single particle / : Tsybovsky Y, Pletnev S, Verardi R, Roederer M, Kwong PD

EMDB-27389:
Cryo-EM Structure of Western Equine Encephalitis Virus
Method: single particle / : Pletnev S, Verardi R, Roedeger M, Kwong P

EMDB-27390:
Cryo-EM Structure of Western Equine Encephalitis Virus VLP in complex with SKW19 fab
Method: single particle / : Pletnev S, Tsybovsky Y, Verardi R, Roedeger M, Kwong P

EMDB-27391:
Asymmetric Unit of Western Equine Encephalitis Virus
Method: single particle / : Pletnev S, Verardi R, Roedeger M, Kwong P

EMDB-27392:
Cryo-EM Structure of Western Equine Encephalitis Virus VLP in complex with SKW24 fab
Method: single particle / : Pletnev S, Tsybovsky Y, Verardi R, Roedeger M, Kwong PD

EMDB-27722:
Cryo-EM Structure of Antibody SKT05 in complex with Western Equine Encephalitis Virus spike (local refinement from VLP particles)
Method: single particle / : Cerutti G, Verardi R, Roederer M, Shapiro L

EMDB-27723:
Cryo-EM Structure of Antibody SKW11 in complex with Western Equine Encephalitis Virus spike (local refinement from VLP particles)
Method: single particle / : Cerutti G, Verardi R, Roederer M, Shapiro L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more